PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000113.1_g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 161aa    MW: 17982.6 Da    PI: 9.4617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000113.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1663113255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y GVr +  +g+++AeIrd + ng   r++lg+f++ae+Aa a+++a+  ++g
  Itr_sc000113.1_g00027.1  63 QYVGVRKRA-WGKYAAEIRDSTRNG--MRVWLGTFDSAEKAALAYDQAAFLIRG 113
                              79****887.**********44465..**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.6E-1163113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2863122IPR001471AP2/ERF domain
PROSITE profilePS5103221.10163121IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2163122IPR016177DNA-binding domain
SMARTSM003801.9E-3363127IPR001471AP2/ERF domain
CDDcd000182.02E-2563121No hitNo description
PRINTSPR003671.5E-86475IPR001471AP2/ERF domain
PRINTSPR003671.5E-887103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEHLPWDAIP FDCEWDNALS LSAEEEEMIC SLLNKGVKSL QKAETPNEIV AKEVKAAAAA  60
EKQYVGVRKR AWGKYAAEIR DSTRNGMRVW LGTFDSAEKA ALAYDQAAFL IRGPSTYLNF  120
PSERVRKSLQ EMKCTGKSGS SLIDALKERN KKRRLGTRAL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2459121163ATERF1
3gcc_A8e-2459121163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764685.11e-44PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC86e-38ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A022S0A81e-39A0A022S0A8_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000344895e-38(Solanum tuberosum)
STRINGSolyc09g089930.1.11e-37(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-37ethylene response factor 1